J3_8RCT_032

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8RCT|1|72|U|34, 8RCT|1|72|U|448, 8RCT|1|72|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCT_032 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0647

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8RCT|1|72|C|32
8RCT|1|72|C|33
8RCT|1|72|U|34
8RCT|1|72|G|35
*
8RCT|1|72|C|445
8RCT|1|72|G|446
8RCT|1|72|A|447
8RCT|1|72|U|448
8RCT|1|72|A|449
8RCT|1|72|G|450
8RCT|1|72|U|451
8RCT|1|72|G|452
8RCT|1|72|A|453
8RCT|1|72|A|454
8RCT|1|72|C|455
8RCT|1|72|C|456
8RCT|1|72|A|457
8RCT|1|72|G|458
8RCT|1|72|U|459
8RCT|1|72|A|460
8RCT|1|72|C|461
*
8RCT|1|72|G|468
8RCT|1|72|G|469
8RCT|1|72|A|470
8RCT|1|72|A|471
8RCT|1|72|A|472
8RCT|1|72|G|473

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain l2

50S ribosomal protein L34