J3_8RCT_040

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCT_040 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.2049

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8RCT|1|A1|G|46
8RCT|1|A1|C|47
*
8RCT|1|A1|G|361
8RCT|1|A1|G|362
8RCT|1|A1|A|363
8RCT|1|A1|A|364
8RCT|1|A1|U|365
8RCT|1|A1|A|366
8RCT|1|A1|U|367
*
8RCT|1|A1|A|393
8RCT|1|A1|G|394
8RCT|1|A1|C|395

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain L1

Small ribosomal subunit protein uS12

Chain P1

30S ribosomal protein S16

Chain i2

50S ribosomal protein L9