J3_8RCT_050

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8RCT|1|A2|C|48, 8RCT|1|A2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCT_050 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1286

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8RCT|1|A2|G|46
8RCT|1|A2|C|47
8RCT|1|A2|C|48
8RCT|1|A2|U|49
8RCT|1|A2|A|50
8RCT|1|A2|A|51
8RCT|1|A2|C|52
*
8RCT|1|A2|G|359
8RCT|1|A2|G|360
8RCT|1|A2|G|361
8RCT|1|A2|G|362
8RCT|1|A2|A|363
8RCT|1|A2|A|364
8RCT|1|A2|U|365
8RCT|1|A2|A|366
8RCT|1|A2|U|367
*
8RCT|1|A2|A|393
8RCT|1|A2|G|394
8RCT|1|A2|C|395

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain L2

Small ribosomal subunit protein uS12