J3_8RD8_011

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RD8_011 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0682

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8RD8|1|iN|C|980
8RD8|1|iN|A|981
8RD8|1|iN|A|982
8RD8|1|iN|G|983
*
8RD8|1|iN|C|1389
8RD8|1|iN|U|1390
8RD8|1|iN|A|1391
8RD8|1|iN|G|1392
8RD8|1|iN|U|1393
8RD8|1|iN|A|1394
8RD8|1|iN|A|1395
*
8RD8|1|iN|U|1417
8RD8|1|iN|G|1418
8RD8|1|iN|A|1419
8RD8|1|iN|A|1420
8RD8|1|iN|U|1421
8RD8|1|iN|A|1422
8RD8|1|iN|C|1423
8RD8|1|iN|G|1424

Current chains

Chain iN

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS9

Chain GS

Small ribosomal subunit protein uS7