J3_8RD8_013
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8RD8|1|iN|A|1019, 8RD8|1|iN|G|1020
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RD8_013 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0764
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RD8|1|iN|U|999
8RD8|1|iN|U|1000
8RD8|1|iN|U|1001
8RD8|1|iN|A|1002
8RD8|1|iN|A|1003
8RD8|1|iN|U|1004
8RD8|1|iN|U|1005
8RD8|1|iN|C|1006
*
8RD8|1|iN|G|1017
8RD8|1|iN|A|1018
8RD8|1|iN|A|1019
8RD8|1|iN|G|1020
8RD8|1|iN|A|1021
8RD8|1|iN|A|1022
8RD8|1|iN|C|1023
8RD8|1|iN|C|1024
8RD8|1|iN|U|1025
8RD8|1|iN|U|1026
8RD8|1|iN|A|1027
8RD8|1|iN|C|1028
*
8RD8|1|iN|G|1266
8RD8|1|iN|G|1267
8RD8|1|iN|C|1268
8RD8|1|iN|U|1269
8RD8|1|iN|A|1270
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S30
- Chain F
- Small ribosomal subunit protein uS9
- Chain HK
- Small ribosomal subunit protein uS14
- Chain JY
- Small ribosomal subunit protein uS10
- Chain MM
- Small ribosomal subunit protein uS13
- Chain SP
- Small ribosomal subunit protein uS19
Coloring options: