J3_8RD8_021
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8RD8|1|Z2|U|487, 8RD8|1|Z2|A|491
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RD8_021 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1067
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
8RD8|1|Z2|G|37
8RD8|1|Z2|C|38
*
8RD8|1|Z2|G|457
8RD8|1|Z2|C|458
8RD8|1|Z2|G|459
8RD8|1|Z2|A|460
8RD8|1|Z2|A|461
8RD8|1|Z2|A|462
8RD8|1|Z2|A|463
8RD8|1|Z2|G|464
8RD8|1|Z2|A|465
8RD8|1|Z2|A|466
8RD8|1|Z2|C|467
*
8RD8|1|Z2|G|479
8RD8|1|Z2|A|480
8RD8|1|Z2|G|481
8RD8|1|Z2|U|482
8RD8|1|Z2|G|483
8RD8|1|Z2|A|484
8RD8|1|Z2|A|485
8RD8|1|Z2|A|486
8RD8|1|Z2|U|487
8RD8|1|Z2|A|488
8RD8|1|Z2|G|489
8RD8|1|Z2|A|490
8RD8|1|Z2|A|491
8RD8|1|Z2|C|492
8RD8|1|Z2|C|493
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain PO
- Large ribosomal subunit protein bL20
- Chain RF
- Large ribosomal subunit protein uL22
- Chain TI
- Large ribosomal subunit protein uL24
Coloring options: