J3_8RD8_032
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UA*UACCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 8RD8|1|iN|U|767
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RD8_032 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.0705
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RD8|1|iN|U|716
8RD8|1|iN|A|717
*
8RD8|1|iN|U|761
8RD8|1|iN|A|762
8RD8|1|iN|C|763
8RD8|1|iN|C|764
8RD8|1|iN|G|765
8RD8|1|iN|A|766
8RD8|1|iN|U|767
8RD8|1|iN|G|768
8RD8|1|iN|G|769
*
8RD8|1|iN|C|776
8RD8|1|iN|A|777
8RD8|1|iN|G|778
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain Cl
- Large ribosomal subunit protein uL2
- Chain FG
- Small ribosomal subunit protein bS6
- Chain KU
- Small ribosomal subunit protein uS11
- Chain NV
- Small ribosomal subunit protein bS21
- Chain OL
- Small ribosomal subunit protein uS15
- Chain R3
- Small ribosomal subunit protein bS18
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