J3_8RDV_001
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAUCUA*UAG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|671, 8RDV|1|Z2|A|777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDV_001 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0698
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RDV|1|Z2|U|668
8RDV|1|Z2|G|669
8RDV|1|Z2|A|670
8RDV|1|Z2|U|671
8RDV|1|Z2|C|672
8RDV|1|Z2|U|673
8RDV|1|Z2|A|674
*
8RDV|1|Z2|U|758
8RDV|1|Z2|A|759
8RDV|1|Z2|G|760
*
8RDV|1|Z2|C|776
8RDV|1|Z2|A|777
8RDV|1|Z2|A|778
8RDV|1|Z2|A|779
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Ba
- Large ribosomal subunit protein bL34
- Chain Cl
- Large ribosomal subunit protein uL2
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