J3_8RDV_002

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0616

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8RDV|1|Z2|C|683
8RDV|1|Z2|A|684
8RDV|1|Z2|G|685
*
8RDV|1|Z2|C|717
8RDV|1|Z2|G|718
8RDV|1|Z2|A|719
8RDV|1|Z2|A|720
8RDV|1|Z2|C|721
*
8RDV|1|Z2|G|745
8RDV|1|Z2|A|746
8RDV|1|Z2|U|747
8RDV|1|Z2|G|748

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2