J3_8RDV_006

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCGACC*GAAAU*AUA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDV|1|Z2|U|1328
8RDV|1|Z2|C|1329
8RDV|1|Z2|G|1330
8RDV|1|Z2|A|1331
8RDV|1|Z2|C|1332
8RDV|1|Z2|C|1333
*
8RDV|1|Z2|G|1366
8RDV|1|Z2|A|1367
8RDV|1|Z2|A|1368
8RDV|1|Z2|A|1369
8RDV|1|Z2|U|1370
*
8RDV|1|Z2|A|1385
8RDV|1|Z2|U|1386
8RDV|1|Z2|A|1387

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Sn

Large ribosomal subunit protein uL23