J3_8RDV_011

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_011 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0645

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8RDV|1|iN|C|980
8RDV|1|iN|A|981
8RDV|1|iN|A|982
8RDV|1|iN|G|983
*
8RDV|1|iN|C|1389
8RDV|1|iN|U|1390
8RDV|1|iN|A|1391
8RDV|1|iN|G|1392
8RDV|1|iN|U|1393
8RDV|1|iN|A|1394
8RDV|1|iN|A|1395
*
8RDV|1|iN|U|1417
8RDV|1|iN|G|1418
8RDV|1|iN|A|1419
8RDV|1|iN|A|1420
8RDV|1|iN|U|1421
8RDV|1|iN|A|1422
8RDV|1|iN|C|1423
8RDV|1|iN|G|1424

Current chains

Chain iN

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS9

Chain GS

Small ribosomal subunit protein uS7