J3_8RDV_014

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

8RDV|1|iN|C|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_014 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1377

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8RDV|1|iN|C|1034
8RDV|1|iN|U|1035
8RDV|1|iN|U|1036
8RDV|1|iN|G|1037
*
8RDV|1|iN|C|1089
8RDV|1|iN|A|1090
8RDV|1|iN|G|1091
*
8RDV|1|iN|C|1255
8RDV|1|iN|U|1256
8RDV|1|iN|U|1257
8RDV|1|iN|A|1258
8RDV|1|iN|C|1259
8RDV|1|iN|G|1260

Current chains

Chain iN

16S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain HK

Small ribosomal subunit protein uS14