J3_8RDV_015

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGAAU*AGUGC*GAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDV|1|iN|A|1046
8RDV|1|iN|G|1047
8RDV|1|iN|A|1048
8RDV|1|iN|A|1049
8RDV|1|iN|U|1050
*
8RDV|1|iN|A|1067
8RDV|1|iN|G|1068
8RDV|1|iN|U|1069
8RDV|1|iN|G|1070
8RDV|1|iN|C|1071
*
8RDV|1|iN|G|1078
8RDV|1|iN|A|1079
8RDV|1|iN|A|1080
8RDV|1|iN|U|1081
8RDV|1|iN|U|1082

Current chains

Chain iN

16S rRNA

Nearby chains

Chain CT

Small ribosomal subunit protein uS3

Chain HK

Small ribosomal subunit protein uS14