J3_8RDV_017
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGU*AUAC*GGCG
- Length
- 11 nucleotides
- Bulged bases
- 8RDV|1|iN|C|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDV_017 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.1723
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RDV|1|iN|U|1160
8RDV|1|iN|G|1161
8RDV|1|iN|U|1162
*
8RDV|1|iN|A|1200
8RDV|1|iN|U|1201
8RDV|1|iN|A|1202
8RDV|1|iN|C|1203
*
8RDV|1|iN|G|1226
8RDV|1|iN|G|1227
8RDV|1|iN|C|1228
8RDV|1|iN|G|1229
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain A4
- Small ribosomal subunit protein uS2
- Chain F
- Small ribosomal subunit protein uS9
- Chain GS
- Small ribosomal subunit protein uS7
- Chain HK
- Small ribosomal subunit protein uS14
- Chain JY
- Small ribosomal subunit protein uS10
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