J3_8RDV_026
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUA*UCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8RDV|1|Z2|A|2371, 8RDV|1|Z2|U|2373, 8RDV|1|Z2|A|2409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDV_026 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0838
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8RDV|1|Z2|G|2265
8RDV|1|Z2|U|2266
8RDV|1|Z2|A|2267
*
8RDV|1|Z2|U|2367
8RDV|1|Z2|C|2368
8RDV|1|Z2|U|2369
8RDV|1|Z2|U|2370
8RDV|1|Z2|A|2371
8RDV|1|Z2|G|2372
8RDV|1|Z2|U|2373
8RDV|1|Z2|G|2374
8RDV|1|Z2|A|2375
8RDV|1|Z2|U|2376
8RDV|1|Z2|C|2377
8RDV|1|Z2|C|2378
*
8RDV|1|Z2|G|2404
8RDV|1|Z2|C|2405
8RDV|1|Z2|U|2406
8RDV|1|Z2|C|2407
8RDV|1|Z2|A|2408
8RDV|1|Z2|A|2409
8RDV|1|Z2|C|2410
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain VH
- Large ribosomal subunit protein bL27
- Chain bk
- Large ribosomal subunit protein bL33
- Chain dh
- Large ribosomal subunit protein bL35
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