J3_8RDV_027

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GUUGAU*AAUUG

Length

13 nucleotides

Bulged bases

8RDV|1|Z2|U|2799, 8RDV|1|Z2|A|2801, 8RDV|1|Z2|U|2850, 8RDV|1|Z2|U|2851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDV|1|Z2|C|2780
8RDV|1|Z2|C|2781
*
8RDV|1|Z2|G|2797
8RDV|1|Z2|U|2798
8RDV|1|Z2|U|2799
8RDV|1|Z2|G|2800
8RDV|1|Z2|A|2801
8RDV|1|Z2|U|2802
*
8RDV|1|Z2|A|2848
8RDV|1|Z2|A|2849
8RDV|1|Z2|U|2850
8RDV|1|Z2|U|2851
8RDV|1|Z2|G|2852

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain MB

Large ribosomal subunit protein bL17

Chain aA

Large ribosomal subunit protein bL32