J3_8RDW_016
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDW_016 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.0788
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8RDW|1|iN|C|1107
8RDW|1|iN|G|1108
8RDW|1|iN|U|1109
8RDW|1|iN|C|1110
8RDW|1|iN|A|1111
8RDW|1|iN|G|1112
*
8RDW|1|iN|C|1151
8RDW|1|iN|G|1152
8RDW|1|iN|C|1153
8RDW|1|iN|A|1154
8RDW|1|iN|A|1155
8RDW|1|iN|C|1156
8RDW|1|iN|C|1157
*
8RDW|1|iN|G|1232
8RDW|1|iN|A|1233
8RDW|1|iN|C|1234
8RDW|1|iN|G|1235
8RDW|1|iN|A|1236
8RDW|1|iN|C|1237
8RDW|1|iN|G|1238
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain A4
- Small ribosomal subunit protein uS2
- Chain CT
- Small ribosomal subunit protein uS3
- Chain E5
- Small ribosomal subunit protein uS5
- Chain F
- Small ribosomal subunit protein uS9
- Chain HK
- Small ribosomal subunit protein uS14
- Chain JY
- Small ribosomal subunit protein uS10
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