J3_8RDW_018

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUAG

Length

17 nucleotides

Bulged bases

8RDW|1|iN|U|1285, 8RDW|1|iN|C|1347

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDW_018 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1516

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.2

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

6

Unit IDs

8RDW|1|iN|C|1282
8RDW|1|iN|A|1283
8RDW|1|iN|A|1284
8RDW|1|iN|U|1285
8RDW|1|iN|G|1286
*
8RDW|1|iN|C|1341
8RDW|1|iN|G|1342
8RDW|1|iN|U|1343
8RDW|1|iN|A|1344
8RDW|1|iN|G|1345
8RDW|1|iN|U|1346
8RDW|1|iN|C|1347
8RDW|1|iN|C|1348
*
8RDW|1|iN|G|1379
8RDW|1|iN|U|1380
8RDW|1|iN|A|1381
8RDW|1|iN|G|1382

Current chains

Chain iN

16S rRNA

Nearby chains

Chain GS

Small ribosomal subunit protein uS7

Chain MM

Small ribosomal subunit protein uS13