J3_8RDW_020

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDW_020 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0669

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8RDW|1|Z2|G|37
8RDW|1|Z2|C|38
*
8RDW|1|Z2|G|457
8RDW|1|Z2|C|458
8RDW|1|Z2|G|459
8RDW|1|Z2|A|460
8RDW|1|Z2|A|461
8RDW|1|Z2|A|462
8RDW|1|Z2|A|463
8RDW|1|Z2|G|464
*
8RDW|1|Z2|C|492
8RDW|1|Z2|C|493

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain PO

Large ribosomal subunit protein bL20

Chain TI

Large ribosomal subunit protein uL24