J3_8RJB_004
3D structure
- PDB id
- 8RJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69243 Å
Loop
- Sequence
- CAG*CGUAG*UCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RJB_004 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1558
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8RJB|1|K|C|1546
8RJB|1|K|A|1547
8RJB|1|K|G|1548
*
8RJB|1|K|C|1580
8RJB|1|K|G|1581
8RJB|1|K|U|1582
8RJB|1|K|A|1583
8RJB|1|K|G|1584
*
8RJB|1|K|U|1609
8RJB|1|K|C|1610
8RJB|1|K|C|1611
8RJB|1|K|G|1612
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain R
- Ribosomal protein L19
- Chain g
- 60S ribosomal protein L34
- Chain p
- 60S ribosomal protein L37a
Coloring options: