J3_8RJB_008

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8RJB|1|K|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|A|2551
8RJB|1|K|G|2552
8RJB|1|K|A|2553
8RJB|1|K|U|2554
8RJB|1|K|G|2555
*
8RJB|1|K|C|2572
8RJB|1|K|A|2573
8RJB|1|K|G|2574
8RJB|1|K|U|2575
*
8RJB|1|K|A|2757
8RJB|1|K|G|2758
8RJB|1|K|G|2759
8RJB|1|K|G|2760
8RJB|1|K|U|2761
8RJB|1|K|G|2762
8RJB|1|K|U|2763
8RJB|1|K|A|2764
8RJB|1|K|A|2765
8RJB|1|K|A|2766
8RJB|1|K|U|2767

Current chains

Chain K

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27