J3_8RJB_020

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

8RJB|1|K|A|1805, 8RJB|1|K|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RJB_020 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.5219

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8RJB|1|K|U|1726
8RJB|1|K|U|1727
*
8RJB|1|K|A|1802
8RJB|1|K|G|1803
8RJB|1|K|A|1804
8RJB|1|K|A|1805
8RJB|1|K|G|1806
*
8RJB|1|K|C|1832
8RJB|1|K|G|1833
8RJB|1|K|U|1834
8RJB|1|K|G|1835
8RJB|1|K|G|1836
8RJB|1|K|A|1837

Current chains

Chain K

28S rRNA

Nearby chains

Chain F

Ribosomal Protein uL30

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29