J3_8RJB_024

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RJB_024 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1689

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8RJB|1|K|A|2598
8RJB|1|K|G|2599
8RJB|1|K|A|2600
8RJB|1|K|A|2601
8RJB|1|K|G|2602
*
8RJB|1|K|C|2737
8RJB|1|K|C|2738
*
8RJB|1|K|G|2742
8RJB|1|K|A|2743
8RJB|1|K|A|2744
8RJB|1|K|A|2745
8RJB|1|K|A|2746
8RJB|1|K|U|2747

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain g

60S ribosomal protein L34

Chain p

60S ribosomal protein L37a