J3_8RJB_025
3D structure
- PDB id
- 8RJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69243 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8RJB|1|K|C|4337, 8RJB|1|K|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RJB_025 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0623
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8RJB|1|K|G|4228
8RJB|1|K|U|4229
8RJB|1|K|C|4230
*
8RJB|1|K|G|4331
8RJB|1|K|C|4332
8RJB|1|K|C|4333
8RJB|1|K|U|4334
8RJB|1|K|C|4335
8RJB|1|K|A|4336
8RJB|1|K|C|4337
8RJB|1|K|G|4338
8RJB|1|K|A|4339
8RJB|1|K|U|4340
8RJB|1|K|C|4341
8RJB|1|K|C|4342
*
8RJB|1|K|G|4370
8RJB|1|K|G|4371
8RJB|1|K|U|4372
8RJB|1|K|G|4373
8RJB|1|K|U|4374
8RJB|1|K|C|4375
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain Q
- Ribosomal protein L26
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: