J3_8RJC_005

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GGAUG*CGCUAAGG*CAC

Length

16 nucleotides

Bulged bases

8RJC|1|K|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|G|1968
8RJC|1|K|G|1969
8RJC|1|K|A|1970
8RJC|1|K|U|1971
8RJC|1|K|G|1972
*
8RJC|1|K|C|1994
8RJC|1|K|G|1995
8RJC|1|K|C|1996
8RJC|1|K|U|1997
8RJC|1|K|A|1998
8RJC|1|K|A|1999
8RJC|1|K|G|2000
8RJC|1|K|G|2001
*
8RJC|1|K|C|2016
8RJC|1|K|A|2017
8RJC|1|K|C|2018

Current chains

Chain K

28S rRNA

Nearby chains