J3_8RJC_009

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|C|3937
8RJC|1|K|G|3938
8RJC|1|K|G|3939
*
8RJC|1|K|C|4074
8RJC|1|K|U|4075
8RJC|1|K|G|4076
8RJC|1|K|A|4077
8RJC|1|K|C|4078
*
8RJC|1|K|G|4168
8RJC|1|K|G|4169
8RJC|1|K|A|4170
8RJC|1|K|C|4171
8RJC|1|K|A|4172
8RJC|1|K|G|4173

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15

Chain i

60S ribosomal protein L36