J3_8RJC_013

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8RJC|1|K|U|4989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|C|4970
8RJC|1|K|A|4971
8RJC|1|K|U|4972
*
8RJC|1|K|G|4986
8RJC|1|K|C|4987
8RJC|1|K|U|4988
8RJC|1|K|U|4989
8RJC|1|K|C|4990
8RJC|1|K|U|4991
*
8RJC|1|K|A|5060
8RJC|1|K|A|5061
8RJC|1|K|G|5062
8RJC|1|K|G|5063

Current chains

Chain K

28S rRNA

Nearby chains

Chain P

uL22

Chain d

60S ribosomal protein L31

Chain w

Ribosomal protein L3