J3_8RJC_014

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8RJC|1|K|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|C|196
8RJC|1|K|A|197
8RJC|1|K|A|198
8RJC|1|K|G|199
*
8RJC|1|K|C|215
8RJC|1|K|C|216
8RJC|1|K|C|217
8RJC|1|K|A|218
8RJC|1|K|G|219
8RJC|1|K|C|220
8RJC|1|K|C|221
8RJC|1|K|C|222
8RJC|1|K|G|223
8RJC|1|K|U|224
8RJC|1|K|G|225
8RJC|1|K|G|226
8RJC|1|K|A|227
8RJC|1|K|C|228
*
8RJC|1|K|G|240
8RJC|1|K|G|241
8RJC|1|K|U|242
8RJC|1|K|A|243
8RJC|1|K|G|244

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain Y

Ribosomal protein L26