J3_8RJC_018

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|C|451
8RJC|1|K|A|452
8RJC|1|K|G|453
8RJC|1|K|U|454
8RJC|1|K|C|455
*
8RJC|1|K|G|701
8RJC|1|K|U|702
8RJC|1|K|G|703
8RJC|1|K|C|704
8RJC|1|K|G|705
*
8RJC|1|K|C|1292
8RJC|1|K|G|1293
8RJC|1|K|A|1294
8RJC|1|K|U|1295
8RJC|1|K|G|1296

Current chains

Chain K

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

Ribosomal protein L32

Chain f

60S ribosomal protein L35a

Chain r

60S ribosomal protein L28