J3_8RJC_019

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

UCUCC*GCCGG*CCACGCGUCCCCCGCGAG

Length

28 nucleotides

Bulged bases

8RJC|1|K|C|1237, 8RJC|1|K|G|1271, 8RJC|1|K|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|U|980
8RJC|1|K|C|981
8RJC|1|K|U|982
8RJC|1|K|C|983
8RJC|1|K|C|984
*
8RJC|1|K|G|1070
8RJC|1|K|C|1071
8RJC|1|K|C|1072
8RJC|1|K|G|1073
8RJC|1|K|G|1074
*
8RJC|1|K|C|1236
8RJC|1|K|C|1237
8RJC|1|K|A|1238
8RJC|1|K|C|1239
8RJC|1|K|G|1244
8RJC|1|K|C|1245
8RJC|1|K|G|1246
8RJC|1|K|U|1247
8RJC|1|K|C|1248
8RJC|1|K|C|1249
8RJC|1|K|C|1250
8RJC|1|K|C|1251
8RJC|1|K|C|1252
8RJC|1|K|G|1271
8RJC|1|K|C|1272
8RJC|1|K|G|1273
8RJC|1|K|A|1274
8RJC|1|K|G|1275

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain E

60S ribosomal protein L6

Chain F

Ribosomal Protein uL30

Chain b

60S ribosomal protein L29