J3_8RJC_026

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

8RJC|1|K|U|4882, 8RJC|1|K|A|4938, 8RJC|1|K|C|4940, 8RJC|1|K|A|4943, 8RJC|1|K|C|4944, 8RJC|1|K|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|C|4749
8RJC|1|K|G|4750
8RJC|1|K|G|4751
8RJC|1|K|U|4752
8RJC|1|K|U|4753
8RJC|1|K|G|4754
*
8RJC|1|K|C|4879
8RJC|1|K|C|4880
8RJC|1|K|U|4881
8RJC|1|K|U|4882
8RJC|1|K|C|4883
*
8RJC|1|K|G|4936
8RJC|1|K|C|4937
8RJC|1|K|A|4938
8RJC|1|K|C|4939
8RJC|1|K|C|4940
8RJC|1|K|G|4941
8RJC|1|K|C|4942
8RJC|1|K|A|4943
8RJC|1|K|C|4944
8RJC|1|K|G|4945
8RJC|1|K|U|4946
8RJC|1|K|U|4947
8RJC|1|K|C|4948
8RJC|1|K|G|4949
8RJC|1|K|U|4950
8RJC|1|K|G|4951

Current chains

Chain K

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

60S ribosomal protein L14

Chain O

60S ribosomal protein L13

Chain f

60S ribosomal protein L35a