J3_8RJD_008

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8RJD|1|K|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|A|2551
8RJD|1|K|G|2552
8RJD|1|K|A|2553
8RJD|1|K|U|2554
8RJD|1|K|G|2555
*
8RJD|1|K|C|2572
8RJD|1|K|A|2573
8RJD|1|K|G|2574
8RJD|1|K|U|2575
*
8RJD|1|K|A|2757
8RJD|1|K|G|2758
8RJD|1|K|G|2759
8RJD|1|K|G|2760
8RJD|1|K|U|2761
8RJD|1|K|G|2762
8RJD|1|K|U|2763
8RJD|1|K|A|2764
8RJD|1|K|A|2765
8RJD|1|K|A|2766
8RJD|1|K|U|2767

Current chains

Chain K

28S rRNA

Nearby chains

Chain 7

Translocon-associated protein subunit gamma

Chain Z

60S ribosomal protein L27