J3_8RJD_015
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8RJD|1|K|U|354, 8RJD|1|K|A|362, 8RJD|1|v|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RJD_015 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0533
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8RJD|1|K|C|351
8RJD|1|K|G|352
8RJD|1|K|A|353
8RJD|1|K|U|354
8RJD|1|K|A|355
8RJD|1|K|G|356
8RJD|1|K|U|357
8RJD|1|K|C|358
8RJD|1|K|A|359
8RJD|1|K|A|360
8RJD|1|K|C|361
8RJD|1|K|A|362
8RJD|1|K|A|363
8RJD|1|K|G|364
8RJD|1|K|U|365
8RJD|1|K|A|366
8RJD|1|K|C|367
*
8RJD|1|K|G|374
8RJD|1|K|G|375
8RJD|1|K|A|376
8RJD|1|K|A|377
8RJD|1|K|A|378
8RJD|1|K|G|379
*
8RJD|1|v|C|21
8RJD|1|v|U|22
8RJD|1|v|C|23
8RJD|1|v|G|24
Current chains
- Chain K
- 28S rRNA
- Chain v
- 5.8S rRNA
Nearby chains
- Chain B
- Nascent chain
- Chain C
- Large ribosomal subunit protein uL4
- Chain Y
- Ribosomal protein L26
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39-like
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