J3_8RJD_022
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 8RJD|1|K|C|2470, 8RJD|1|K|A|2472, 8RJD|1|K|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJD|1|K|A|2451
8RJD|1|K|G|2452
8RJD|1|K|A|2453
8RJD|1|K|U|2454
8RJD|1|K|G|2455
8RJD|1|K|G|2456
*
8RJD|1|K|C|2465
8RJD|1|K|G|2466
8RJD|1|K|U|2467
8RJD|1|K|U|2468
8RJD|1|K|C|2469
8RJD|1|K|C|2470
8RJD|1|K|G|2471
8RJD|1|K|A|2472
8RJD|1|K|A|2473
8RJD|1|K|G|2474
8RJD|1|K|G|2475
8RJD|1|K|G|2476
*
8RJD|1|K|C|2501
8RJD|1|K|A|2502
8RJD|1|K|G|2503
8RJD|1|K|C|2504
8RJD|1|K|C|2505
8RJD|1|K|G|2506
8RJD|1|K|A|2507
8RJD|1|K|U|2508
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
- Chain X
- Large ribosomal subunit protein uL23 N-terminal domain-containing protein
- Chain j
- Ribosomal protein L37
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: