J3_8RL2_010

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RL2_010 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.175

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

8RL2|1|L5|G|1969
8RL2|1|L5|A|1970
8RL2|1|L5|C|1971
*
8RL2|1|L5|G|1995
8RL2|1|L5|C|1996
8RL2|1|L5|U|1997
8RL2|1|L5|A|1998
8RL2|1|L5|A|1999
8RL2|1|L5|G|2000
8RL2|1|L5|G|2001
*
8RL2|1|L5|C|2016
8RL2|1|L5|A|2017
8RL2|1|L5|C|2018

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CF

mRNA turnover protein 4 homolog

Chain CH

Ribosome biogenesis protein NSA2 homolog

Chain Lt

Large ribosomal subunit protein uL11