J3_8RL2_022

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8RL2|1|L5|U|4882, 8RL2|1|L5|A|4938, 8RL2|1|L5|C|4940, 8RL2|1|L5|A|4943, 8RL2|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RL2|1|L5|G|4751
8RL2|1|L5|U|4752
8RL2|1|L5|U|4753
8RL2|1|L5|G|4754
*
8RL2|1|L5|C|4879
8RL2|1|L5|C|4880
8RL2|1|L5|U|4881
8RL2|1|L5|U|4882
8RL2|1|L5|C|4883
*
8RL2|1|L5|G|4936
8RL2|1|L5|C|4937
8RL2|1|L5|A|4938
8RL2|1|L5|C|4939
8RL2|1|L5|C|4940
8RL2|1|L5|G|4941
8RL2|1|L5|C|4942
8RL2|1|L5|A|4943
8RL2|1|L5|C|4944
8RL2|1|L5|G|4945
8RL2|1|L5|U|4946
8RL2|1|L5|U|4947
8RL2|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a