J3_8RPY_006
3D structure
- PDB id
- 8RPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RPY_006 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.0652
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn in J3
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RPY|1|A|C|2091
8RPY|1|A|U|2092
8RPY|1|A|G|2093
*
8RPY|1|A|C|2196
8RPY|1|A|U|2197
8RPY|1|A|A|2198
8RPY|1|A|A|2199
8RPY|1|A|C|2200
*
8RPY|1|A|G|2223
8RPY|1|A|G|2224
8RPY|1|A|A|2225
8RPY|1|A|C|2226
8RPY|1|A|A|2227
8RPY|1|A|G|2228
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain H
- Large ribosomal subunit protein bL9
- Chain X
- Large ribosomal subunit protein bL28
Coloring options: