J3_8RPZ_011

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RPZ_011 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0635

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8RPZ|1|A|G|30
8RPZ|1|A|C|31
*
8RPZ|1|A|G|474
8RPZ|1|A|C|475
8RPZ|1|A|G|476
8RPZ|1|A|A|477
8RPZ|1|A|A|478
8RPZ|1|A|A|479
8RPZ|1|A|A|480
8RPZ|1|A|G|481
*
8RPZ|1|A|C|509
8RPZ|1|A|C|510

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20

Chain U

Large ribosomal subunit protein uL24

Chain y

Apidaecins type 88