J3_8RPZ_013
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8RPZ|1|A|U|34, 8RPZ|1|A|U|448, 8RPZ|1|A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RPZ_013 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1064
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8RPZ|1|A|C|32
8RPZ|1|A|C|33
8RPZ|1|A|U|34
8RPZ|1|A|G|35
*
8RPZ|1|A|C|445
8RPZ|1|A|G|446
8RPZ|1|A|A|447
8RPZ|1|A|U|448
8RPZ|1|A|A|449
8RPZ|1|A|G|450
8RPZ|1|A|U|451
8RPZ|1|A|G|452
8RPZ|1|A|A|453
8RPZ|1|A|A|454
8RPZ|1|A|C|455
8RPZ|1|A|C|456
8RPZ|1|A|A|457
8RPZ|1|A|G|458
8RPZ|1|A|U|459
8RPZ|1|A|A|460
8RPZ|1|A|C|461
*
8RPZ|1|A|G|468
8RPZ|1|A|G|469
8RPZ|1|A|A|470
8RPZ|1|A|A|471
8RPZ|1|A|A|472
8RPZ|1|A|G|473
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain E
- Large ribosomal subunit protein uL4
- Chain Q
- Large ribosomal subunit protein bL20
- Chain T
- Large ribosomal subunit protein uL23
- Chain y
- Apidaecins type 88
Coloring options: