J3_8RQ0_006

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RQ0_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0539

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8RQ0|1|A|C|2091
8RQ0|1|A|U|2092
8RQ0|1|A|G|2093
*
8RQ0|1|A|C|2196
8RQ0|1|A|U|2197
8RQ0|1|A|A|2198
8RQ0|1|A|A|2199
8RQ0|1|A|C|2200
*
8RQ0|1|A|G|2223
8RQ0|1|A|G|2224
8RQ0|1|A|A|2225
8RQ0|1|A|C|2226
8RQ0|1|A|A|2227
8RQ0|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28