J3_8RQ0_009
3D structure
- PDB id
- 8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 8RQ0|1|A|U|2833, 8RQ0|1|A|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RQ0_009 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1666
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8RQ0|1|A|G|2812
8RQ0|1|A|A|2813
8RQ0|1|A|A|2814
8RQ0|1|A|C|2815
*
8RQ0|1|A|G|2831
8RQ0|1|A|U|2832
8RQ0|1|A|U|2833
8RQ0|1|A|G|2834
8RQ0|1|A|A|2835
8RQ0|1|A|U|2836
*
8RQ0|1|A|A|2882
8RQ0|1|A|A|2883
8RQ0|1|A|U|2884
8RQ0|1|A|G|2885
8RQ0|1|A|A|2886
8RQ0|1|A|A|2887
8RQ0|1|A|C|2888
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain D
- Large ribosomal subunit protein uL3
- Chain N
- Large ribosomal subunit protein bL17
- Chain S
- Large ribosomal subunit protein uL22
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