J3_8RQ0_013

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8RQ0|1|A|U|34, 8RQ0|1|A|U|448, 8RQ0|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RQ0_013 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1064

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8RQ0|1|A|C|32
8RQ0|1|A|C|33
8RQ0|1|A|U|34
8RQ0|1|A|G|35
*
8RQ0|1|A|C|445
8RQ0|1|A|G|446
8RQ0|1|A|A|447
8RQ0|1|A|U|448
8RQ0|1|A|A|449
8RQ0|1|A|G|450
8RQ0|1|A|U|451
8RQ0|1|A|G|452
8RQ0|1|A|A|453
8RQ0|1|A|A|454
8RQ0|1|A|C|455
8RQ0|1|A|C|456
8RQ0|1|A|A|457
8RQ0|1|A|G|458
8RQ0|1|A|U|459
8RQ0|1|A|A|460
8RQ0|1|A|C|461
*
8RQ0|1|A|G|468
8RQ0|1|A|G|469
8RQ0|1|A|A|470
8RQ0|1|A|A|471
8RQ0|1|A|A|472
8RQ0|1|A|G|473

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain E

Large ribosomal subunit protein uL4

Chain Q

Large ribosomal subunit protein bL20

Chain T

Large ribosomal subunit protein uL23

Chain y

Apidaecins type 88

Chain z

Apidaecins type 88