3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8RQ2_006 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.0539
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn in J3
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

8RQ2|1|A|C|2091
8RQ2|1|A|U|2092
8RQ2|1|A|G|2093
*
8RQ2|1|A|C|2196
8RQ2|1|A|U|2197
8RQ2|1|A|A|2198
8RQ2|1|A|A|2199
8RQ2|1|A|C|2200
*
8RQ2|1|A|G|2223
8RQ2|1|A|G|2224
8RQ2|1|A|A|2225
8RQ2|1|A|C|2226
8RQ2|1|A|A|2227
8RQ2|1|A|G|2228

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
Large ribosomal subunit protein uL2
Chain H
Large ribosomal subunit protein bL9
Chain X
Large ribosomal subunit protein bL28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1096 s