3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
GC*GCGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8RQ2_011 not in the Motif Atlas
Geometric match to J3_8VTW_036
Geometric discrepancy: 0.0635
The information below is about J3_8VTW_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_69021.1
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
7

Unit IDs

8RQ2|1|A|G|30
8RQ2|1|A|C|31
*
8RQ2|1|A|G|474
8RQ2|1|A|C|475
8RQ2|1|A|G|476
8RQ2|1|A|A|477
8RQ2|1|A|A|478
8RQ2|1|A|A|479
8RQ2|1|A|A|480
8RQ2|1|A|G|481
*
8RQ2|1|A|C|509
8RQ2|1|A|C|510

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
Large ribosomal subunit protein bL20
Chain U
Large ribosomal subunit protein uL24
Chain y
Apidaecins type 88

Coloring options:


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