J3_8RW1_001

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AG*CGCAAAU*AG(PSU)

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RW1_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1026

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8RW1|1|2|A|41
8RW1|1|2|G|42
*
8RW1|1|2|C|432
8RW1|1|2|G|433
8RW1|1|2|C|434
8RW1|1|2|A|435
8RW1|1|2|A|436
8RW1|1|2|A|437
8RW1|1|2|U|438
*
8RW1|1|2|A|463
8RW1|1|2|G|464
8RW1|1|2|PSU|465

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain X

KLLA0B11231p