J3_8RXH_001
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AAGCGAAAA*UGAAUAC*GUG(A2M)GUA(PSU)U
- Length
- 25 nucleotides
- Bulged bases
- 8RXH|1|L1|A|217, 8RXH|1|L1|U|219, 8RXH|1|L1|G|234, 8RXH|1|L1|U|237
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RXH|1|L1|A|193
8RXH|1|L1|A|194
8RXH|1|L1|G|195
8RXH|1|L1|C|196
8RXH|1|L1|G|197
8RXH|1|L1|A|198
8RXH|1|L1|A|199
8RXH|1|L1|A|200
8RXH|1|L1|A|201
*
8RXH|1|L1|U|215
8RXH|1|L1|G|216
8RXH|1|L1|A|217
8RXH|1|L1|A|218
8RXH|1|L1|U|219
8RXH|1|L1|A|220
8RXH|1|L1|C|221
*
8RXH|1|L1|G|232
8RXH|1|L1|U|233
8RXH|1|L1|G|234
8RXH|1|L1|A2M|235
8RXH|1|L1|G|236
8RXH|1|L1|U|237
8RXH|1|L1|A|238
8RXH|1|L1|PSU|239
8RXH|1|L1|U|240
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L4
- Large subunit ribosomal RNA; LSU rRNA
- Chain LC
- Putative ribosomal protein L1a
- Chain LW
- Putative 60S ribosomal protein L26
- Chain LZ
- Putative 60S ribosomal protein L28
- Chain Lf
- 60S ribosomal protein L32
Coloring options: