J3_8RXH_014

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

U(PSU)UAAUU(PSU)G*C(OMG)GGGAACUUUAC*GGCGA

Length

27 nucleotides

Bulged bases

8RXH|1|S1|G|1551, 8RXH|1|S1|G|1553

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RXH|1|S1|U|1532
8RXH|1|S1|PSU|1533
8RXH|1|S1|U|1534
8RXH|1|S1|A|1535
8RXH|1|S1|A|1536
8RXH|1|S1|U|1537
8RXH|1|S1|U|1538
8RXH|1|S1|PSU|1539
8RXH|1|S1|G|1540
*
8RXH|1|S1|C|1549
8RXH|1|S1|OMG|1550
8RXH|1|S1|G|1551
8RXH|1|S1|G|1552
8RXH|1|S1|G|1553
8RXH|1|S1|A|1554
8RXH|1|S1|A|1555
8RXH|1|S1|C|1556
8RXH|1|S1|U|1557
8RXH|1|S1|U|1558
8RXH|1|S1|U|1559
8RXH|1|S1|A|1560
8RXH|1|S1|C|1561
*
8RXH|1|S1|G|1855
8RXH|1|S1|G|1856
8RXH|1|S1|C|1857
8RXH|1|S1|G|1858
8RXH|1|S1|A|1859

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain S2

Transfer RNA; tRNA

Chain SL

Putative 40S ribosomal protein S16

Chain SM

Putative ribosomal protein S20

Chain SR

Putative 40S ribosomal protein S18

Chain SS

Putative ribosomal protein S29

Chain SW

Putative 40S ribosomal protein S15

Chain Sa

40S ribosomal protein S25

Chain Sf

Ubiquitin-60S ribosomal protein L40