J3_8RXH_036

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UGACAGUAAAACCAAUGC*GCAGUAACACCCAGCAGUG*CAA

Length

40 nucleotides

Bulged bases

8RXH|1|S1|G|252, 8RXH|1|S1|A|281, 8RXH|1|S1|A|285, 8RXH|1|S1|A|288, 8RXH|1|S1|U|290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RXH|1|S1|U|247
8RXH|1|S1|G|248
8RXH|1|S1|A|249
8RXH|1|S1|C|250
8RXH|1|S1|A|251
8RXH|1|S1|G|252
8RXH|1|S1|U|253
8RXH|1|S1|A|254
8RXH|1|S1|A|255
8RXH|1|S1|A|256
8RXH|1|S1|A|257
8RXH|1|S1|C|258
8RXH|1|S1|C|259
8RXH|1|S1|A|260
8RXH|1|S1|A|261
8RXH|1|S1|U|262
8RXH|1|S1|G|263
8RXH|1|S1|C|264
*
8RXH|1|S1|G|273
8RXH|1|S1|C|274
8RXH|1|S1|A|275
8RXH|1|S1|G|276
8RXH|1|S1|U|277
8RXH|1|S1|A|278
8RXH|1|S1|A|279
8RXH|1|S1|C|280
8RXH|1|S1|A|281
8RXH|1|S1|C|282
8RXH|1|S1|C|283
8RXH|1|S1|C|284
8RXH|1|S1|A|285
8RXH|1|S1|G|286
8RXH|1|S1|C|287
8RXH|1|S1|A|288
8RXH|1|S1|G|289
8RXH|1|S1|U|290
8RXH|1|S1|G|291
*
8RXH|1|S1|C|298
8RXH|1|S1|A|299
8RXH|1|S1|A|300

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SU

Ribosomal protein S17 family protein

Chain Sh

Putative RNA binding protein