J3_8S8D_011
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8S8D_011 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3605
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8S8D|1|2|U|1282
8S8D|1|2|C|1283
8S8D|1|2|U|1284
8S8D|1|2|U|1285
8S8D|1|2|A|1286
8S8D|1|2|G|1287
*
8S8D|1|2|C|1326
8S8D|1|2|G|1327
8S8D|1|2|A|1328
8S8D|1|2|G|1329
8S8D|1|2|A|1330
8S8D|1|2|C|1331
*
8S8D|1|2|G|1417
8S8D|1|2|C|1418
8S8D|1|2|A|1419
8S8D|1|2|A|1420
8S8D|1|2|U|1421
8S8D|1|2|A|1422
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS5
- Chain D
- 40S ribosomal protein S3
- Chain Q
- Small ribosomal subunit protein uS9
- Chain R
- KLLA0B01474p
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain i
- Eukaryotic translation initiation factor 1A
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