J3_8S8D_014
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 8S8D|1|2|U|1388, 8S8D|1|2|U|1411, 8S8D|1|2|U|1412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8S8D_014 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.1268
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8S8D|1|2|A|1335
8S8D|1|2|A|1336
8S8D|1|2|C|1337
*
8S8D|1|2|G|1384
8S8D|1|2|G|1385
8S8D|1|2|A|1386
8S8D|1|2|C|1387
8S8D|1|2|U|1388
8S8D|1|2|A|1389
*
8S8D|1|2|U|1405
8S8D|1|2|G|1406
8S8D|1|2|G|1407
8S8D|1|2|A|1408
8S8D|1|2|A|1409
8S8D|1|2|G|1410
8S8D|1|2|U|1411
8S8D|1|2|U|1412
8S8D|1|2|U|1413
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- KLLA0D10659p
- Chain Q
- Small ribosomal subunit protein uS9
- Chain R
- KLLA0B01474p
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain g
- KLLA0E12277p
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